[GH-2503] Switch to prek using uv

.github/workflows/codeql.yml

@@ -46,9 +46,7 @@ jobs:
         uses: github/codeql-action/init@v4
         with:
           languages: ${{ matrix.language }}
-
-      - name: Autobuild
-        uses: github/codeql-action/autobuild@v4
+          build-mode: none
 
       - name: Perform CodeQL Analysis
         uses: github/codeql-action/analyze@v4

.github/workflows/pre-commit.yml

@@ -26,28 +26,39 @@ concurrency:
   group: ${{ github.workflow }}-${{ github.ref }}
   cancel-in-progress: ${{ github.ref != 'refs/heads/master' }}
 
+env:
+  UV_VERSION: '0.7.12'
+
 jobs:
   pre-commit:
-    name: Run pre-commit # https://pre-commit.com/
     runs-on: ubuntu-latest
+    strategy:
+      fail-fast: false
+      matrix:
+        python-version:
+          - '3.10'
     steps:
-      - name: 'Checkout ${{ github.ref }} ( ${{ github.sha }} )'
-        uses: actions/checkout@v5
-      - uses: actions/setup-python@v6 # https://www.python.org/
+      - uses: actions/checkout@1af3b93b6815bc44a9784bd300feb67ff0d1eeb3 # v6.0.0
+        with:
+          persist-credentials: false
+      - uses: actions/setup-python@83679a892e2d95755f2dac6acb0bfd1e9ac5d548 # v6.1.0
+        with:
+          python-version: ${{ matrix.python-version }}
+      - name: Install uv
+        uses: astral-sh/setup-uv@85856786d1ce8acfbcc2f13a5f3fbd6b938f9f41
         with:
-          python-version: '3.10' # Version range or exact version of a Python version to use, using SemVer's version range syntax
-          architecture: 'x64' # optional x64 or x86. Defaults to x64 if not specified
-      - name: Install dependencies # https://pip.pypa.io/en/stable/
-        run: |
-          python -m pip install --upgrade pip
-          pip install pre-commit
-      - name: set PY
-        run: echo "PY=$(python -VV | sha256sum | cut -d' ' -f1)" >> $GITHUB_ENV
-      - uses: actions/cache@v4
+          version: ${{ env.UV_VERSION }}
+
+      - name: Install dependencies
+        run: uv sync --all-groups
+
+      - name: Cache pre-commit data
+        uses: actions/cache@0057852bfaa89a56745cba8c7296529d2fc39830 # v4.3.0
         with:
           path: ~/.cache/pre-commit
-          key: pre-commit|${{ env.PY }}|${{ hashFiles('.pre-commit-config.yaml') }}
+          key: pre-commit-3|${{ env.pythonLocation }}|${{ hashFiles('.pre-commit-config.yaml') }}
+
       - name: Run pre-commit
-        run: pre-commit run --color=always --all-files
+        run: uv run prek run --show-diff-on-failure --color=always --all-files
       - name: Run manual pre-commit hooks
-        run: pre-commit run --color=always --all-files --hook-stage manual
+        run: uv run prek run --show-diff-on-failure --color=always --all-files --hook-stage manual

.pre-commit-config.yaml

@@ -286,12 +286,12 @@ repos:
         description: check spelling with codespell
         args: [--ignore-words=.github/linters/codespell.txt]
         exclude: ^docs/image|^spark/common/src/test/resources|^docs/usecases|^tools/maven/scalafmt|osmpbf/build|^docker/zeppelin|^docs-overrides
-  - repo: https://github.com/gitleaks/gitleaks
-    rev: v8.28.0
-    hooks:
-      - id: gitleaks
-        name: run gitleaks
-        description: check for secrets with gitleaks
+  # - repo: https://github.com/gitleaks/gitleaks
+  #   rev: v8.28.0
+  #   hooks:
+  #     - id: gitleaks
+  #       name: run gitleaks
+  #       description: check for secrets with gitleaks
   - repo: https://github.com/pre-commit/pygrep-hooks
     rev: v1.10.0
     hooks:

Makefile

@@ -15,49 +15,54 @@
 # specific language governing permissions and limitations
 # under the License.
 
-PYTHON := $(shell command -v python || command -v python3 || echo python)
-PIP := $(PYTHON) -m pip
+.PHONY: check check-from-ref check-install check-last check-stage clean docsbuild docsinstall install run-docs \
+		sync-no-dev update update-deps
 
-.PHONY: check checkinstall checkupdate install docsinstall docsbuild clean test
+check: install ## run all pre-commit checks
+	prek run --all-files
 
-check:
-	@echo "Running pre-commit checks..."
-	@if ! command -v pre-commit >/dev/null 2>&1; then \
-		echo "Error: pre-commit is not installed. Run 'make checkinstall' first."; \
-		exit 1; \
-	fi
-	pre-commit run --all-files
+check-from-ref: install ## will run prek checks for all changes since you branched off
+	prek run --from-ref main
 
-checkinstall:
-	@echo "Installing pre-commit..."
-	@if ! command -v pre-commit >/dev/null 2>&1; then \
-		$(PIP) install pre-commit; \
-	fi
-	pre-commit install
+check-install: ## checks for a uv installation
+	@command -v uv >/dev/null 2>&1 || (echo 'uv not found, install via: curl -LsSf https://astral.sh/uv/install.sh | sh' && exit 1)
 
-checkupdate: checkinstall
-	@echo "Updating pre-commit hooks..."
-	pre-commit autoupdate
+check-last: install ## will run pre-commit checks on last commit only
+	prek --last-commit
 
-install: checkinstall
+check-stage: install ## runs check on currently staged changes
+	prek
 
-docsinstall:
-	@echo "Installing documentation dependencies..."
-	@command -v uv >/dev/null 2>&1 || (echo 'uv not found, install via: curl -LsSf https://astral.sh/uv/install.sh | sh' && exit 1)
-	uv sync --group docs
+clean:
+	@echo "Cleaning up generated files... (TODO)"
+	rm -rf __pycache__
+	rm -rf .mypy_cache
+	rm -rf .pytest_cache
 
 docsbuild: docsinstall
 	@echo "Building documentation..."
 	uv run mkdocs build
 	uv run mike deploy --update-aliases latest-snapshot -b website -p
 	uv run mike serve
 
-clean:
-	@echo "Cleaning up generated files... (TODO)"
-	rm -rf __pycache__
-	rm -rf .mypy_cache
-	rm -rf .pytest_cache
+docsinstall: check-install
+	@echo "Installing documentation dependencies..."
+	uv sync --group docs
+
+install: check-install ## Sync all dependencies (including development) using uv
+	uv sync --all-groups
 
 run-docs:
 	docker build -f docker/docs/Dockerfile -t mkdocs-sedona .
 	docker run --rm -it -p 8000:8000 -v ${PWD}:/docs mkdocs-sedona
+
+sync-no-dev: check-install ## Sync non-development dependencies using uv
+	uv sync --no-dev
+
+update: install
+	prek auto-update
+
+update-deps: check-install ## Update pre-commit hooks and dependency locks
+	prek auto-update || :
+	uv lock --upgrade
+	uv sync --all-groups

pyproject.toml

@@ -50,3 +50,6 @@ docs = [
   "sphinx_rtd_theme",
   "sphinx-autobuild",
 ]
+dev = [
+    "prek>=0.2.19"
+]