Refactor `updateImpress` to use newly generated `metadataParameters.csv` instead of updating DRrequiredAgeing package locally

[marinak-ebi]

updateImpress function is currently updating metadataParameters.csv in the DRrequiredAgeing package on cluster. Location of updated file is: ${PATH}/miniconda_08082022/miniconda/envs/R/lib/R/library/DRrequiredAgeing/extdata/metadataParameters.csv

1. Navigate following message in the log file stats_pipeline_${VERSION}.err to find path to the new metadataParameters.csv:
   

   impc_stats_pipeline/Late adults stats pipeline/DRrequiredAgeing/DRrequiredAgeingPackage/R/sideFunctions.R

   Line 4256 in f3bccf6

   message0('\tThe metadatafile file:\n\t => ', fileNameMeta)

2. Comparison of the metadataParameters.csv above and the metadataParameters.csv uploaded on GitHub shows those files differ and updated file has 11,182 rows vs. 10,420 in the GitHub file.

3. metadataParameters.csv is still in use:
   

   impc_stats_pipeline/Late adults stats pipeline/DRrequiredAgeing/DRrequiredAgeingPackage/R/main.R

   Line 107 in f3bccf6

   MetaDataList = read.csv(file = file.path(local(), 'metadataParameters.csv'))

Because of that, we need to refactor updateImpress to use successfully singularity container. This approach of updating the file is not an option.

• Get rid of updating the package locally on conda
• Refactor the code, so it will be using locally generated metadataParameters.csv file