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yuyuan871111/README.md

Yu-Yuan (Stuart) Yang

  • 👋 Hi, I’m @yuyuan871111
  • 👀 I’m interested in structural biology, molecular dynamics, deep learning, machine learning, quantum computing, bioinformatics, and computational biology.
  • 🌱 I’m currently learning the semantic segmentation on protein surfaces at protein-ligand binding sites.
  • 🌱 I'm also an open-source software contributor (on MDAnalysis, ProLIF).
  • 💞️ I’m working in Arianna Fornili's lab (Queen Mary University of London), supervised by Richard Pickersgill and Arianna Fornili.
  • 👀 I have worked on an application of deep learning to assist neurologists in the diagnosis (fastevalp project, source codes).
  • 📫 How to reach me:

    email: adp871111[at]gmail.com

Pinned Loading

  1. fast_eval_Parkinsonism fast_eval_Parkinsonism Public

    FastEval Parkinsonism is a AI-based online solution for self-assessing parkinsonism in real time.

    HTML 2 1

  2. dimpyplot_chordplot dimpyplot_chordplot Public

    Forked from eachanjohnson/dimpyplot

    A Python frontend to the LigPlot+ program, allowing batch processing of Protein Data Bank (PDB) files through the DIMPLOT algorithm.

    PostScript 1 3

  3. chemosim-lab/ProLIF chemosim-lab/ProLIF Public

    Interaction Fingerprints for protein-ligand complexes and more

    Python 456 87

  4. MDAnalysis/mdanalysis MDAnalysis/mdanalysis Public

    MDAnalysis is a Python library to analyze molecular dynamics simulations.

    Python 1.5k 750

  5. Google Summer of Code 2025 Final Rep... Google Summer of Code 2025 Final Report - MDAnalysis x ProLIF Project 5: H-Bond interactions from implicit hydrogens
    1 
    # Google Summer of Code 2025 Final Report - MDAnalysis x ProLIF Project 5: H-Bond interactions from implicit hydrogens
    2 
    Contributor: Yu-Yuan (Stuart) Yang ([@yuyuan871111](https://github.com/yuyuan871111))
    3 
    Mentors: Cédric Bouysset ([@cbouy](https://github.com/cbouy), [@cbouysset](https://github.com/cbouysset)), Valerij Talagayev ([@talagayev](https://github.com/talagayev))
    4 
    Organization: [MDAnalysis](https://www.mdanalysis.org/)
    5 
    
              
    
          
    
    
    
  
    

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